morphometry

DL+DiReCT - Direct Cortical Thickness Estimation using Deep Learning-based Anatomy Segmentation and Cortex Parcellation

Tools for MRI mouse brain morphometry

A python module designed to reduce your brain load while accessing FreeSurfer brain surface and morphometry data files of single subjects and groups.

Fluvial Corridor Toolbox QGis Plugin

This plugin provides tools for geomorphological analysis in drainage basins.

Symmetrization of 2D pattern using nonrigid landmark registration

Fluvial Corridor Toolbox Applications

Brain Morphometry Estimation: From Hours to Seconds Using Deep Learning

Plugin de QGIS que delimita cuencas hidrográficas automáticamente a partir de un DEM y puntos de exutorio, calculando índices morfométricos (Kc, Rr, Dd) y perfiles topográficos por cuenca. Pipeline de 9 pasos con Whitebox Workflows, GDAL y la API de QGIS. Desarrollado en la Escuela de Geografía, UACh.

Longitudinal Imaging Deformation Analysis Repository

MorphoLogic extracts comprehensive neuronal morphometrics from 2D SWC reconstructions and can perform morphology-aware mapping to project concurrent microscopy signals or (synaptic) puncta onto reconstructed neurons. Outputs include per-cell diagnostic visualizations and per-dataset aggregated CSV tables spanning multilevel summaries.

Single-subject structural MRI processing with CAT26 and SPM25, including tissue segmentation, QC, global volumes, and VBM preparation.

Segmentation of faint and out-of-focus vessels in fluorescence retina images, plus a vessel-network morphometry panel.

Cellpose 4.0.8 (frozen) with ASTRA training modifications for deterministic morphometric workflows.

Current code for my hippocampal morphometry workflow, based on the hippodeep_pytorch segmentation program and the SlicerSALT shape analysis software.

Segment and measure binary branching shapes: centerlines, hierarchical space partitioning, and width

Single-subject FreeSurfer 7.4.1 cortical reconstruction and morphometry using public OpenNeuro structural MRI data.